@article {10810, title = {Lopinavir/Ritonavir Treatment Induces Oxidative Stress and Caspaseindependent Apoptosis in Human Glioblastoma U-87 MG Cell Line.}, journal = {Curr HIV Res}, volume = {16}, year = {2018}, month = {2018}, pages = {106-112}, abstract = {

BACKGROUND: Lopinavir and Ritonavir (LPV/r) treatment is widely used to prevent HIV mother-to-child transmission. Nevertheless, studies related to the impact of these compounds on patients, in particular in the foetus and newborns, are strictly required due to the controversial findings reported in the literature concerning possible neurologic side effects following the administration of these drugs.

OBJECTIVES: In our study, we evaluated the impact of LPV/r treatment on the human glioblastoma U- 87 MG cell line.

METHODS: In order to evaluate the influence of Lopinavir and Ritonavir in terms of oxidative stress (ROS production), mitochondrial morphology and apoptotic cell death, the latter either in the presence or in the absence of caspase-3 and -9 inhibitors, we treated U-87 MG with increasing doses (0.1-1-10-25-50 {\textmu}M) of Lopinavir and Ritonavir for 24h, either in single formulation or in combination. ROS production was measured by flow cytometry using H2DCFDA dye, mitochondrial morphology was evaluated using MitoRed dye and apoptotic cell death was monitored by flow cytometry using Annexin V-FITC and Propidium Iodide.

RESULTS: We observed that co-treatment with Lopinavir and Ritonavir (25 and 50 {\textmu}M) promoted a significant increase in ROS production, caused mitochondrial network damage and induced apoptosis in a caspase-independent manner.

CONCLUSION: Based on our findings, concordant with others reported in the literature, we hypothesize that LPV/r treatment could not be entirely free from side effects, being aware of the need of validation in in vivo models, necessary to confirm our results.

}, issn = {1873-4251}, doi = {10.2174/1570162X16666180528100922}, author = {Gratton, Rossella and Tricarico, Paola Maura and Guimar{\~a}es, Rafael Lima and Celsi, Fulvio and Crovella, Sergio} } @article {8320, title = {DEFB1 gene polymorphisms and tuberculosis in a Northeastern Brazilian population.}, journal = {Braz J Microbiol}, volume = {47}, year = {2016}, month = {2016 Apr-Jun}, pages = {389-93}, abstract = {

β-Defensin-1, an antimicrobial peptide encoded by the DEFB1 gene, is known to play an important role in lung mucosal immunity. In our association study we analyzed three DEFB1 functional polymorphisms -52G>A (rs1799946), -44C>G (rs1800972) and -20G>A (rs11362) in 92 tuberculosis patients and 286 healthy controls, both from Northeast Brazil: no association was found between the studied DEFB1 polymorphisms and the disease. However we cannot exclude that this lack of association could be due to the low number of subjects analyzed, as suggested by the low statistical power achieved for the three analyzed SNPs (values between 0.16 and 0.50).

}, issn = {1678-4405}, doi = {10.1016/j.bjm.2015.09.001}, author = {Celerino da Silva, Ronaldo and da Cruz, Heidi Lacerda Alves and Brand{\~a}o, Lucas Andr{\'e} Cavalcanti and Guimar{\~a}es, Rafael Lima and Montenegro, Lilian Maria Lapa and Schindler, Haiana Charifker and Segat, Ludovica and Crovella, Sergio} } @article {8480, title = {Frequency of the CCR5-delta32 allele in Brazilian populations: A systematic literature review and meta-analysis.}, journal = {Infect Genet Evol}, volume = {43}, year = {2016}, month = {2016 Sep}, pages = {101-7}, abstract = {

The CCR5 is a chemokine receptor widely expressed by several immune cells that are engaged in inflammatory responses. Some populations have individuals exhibiting a 32bp deletion in the CCR5 gene (CCR5-delta32) that produces a truncated non-functional protein not expressed on the cell surface. This polymorphism, known to be associated with susceptibility to infectious and inflammatory diseases, such as osteomyelitis, pre-eclampsia, systemic lupus erythematous, juvenile idiopathic arthritis, rheumatoid arthritis and HIV/AIDS, is more commonly found in European populations with average frequency of 10\%. However, it is also possible to observe a significant frequency in other world populations, such as the Brazilian one. We performed a systematic review and meta-analysis of CCR5-delta32 genetic association studies in Brazilian populations throughout the country to estimate the frequency of this polymorphism. We also compared CCR5-delta32 frequencies across Brazilian regions. The systematic literature reviewed studies involving delta32 allele in Brazilian populations published from 1995 to 2015. Among the reviewed literature, 25 studies including 30 Brazilian populations distributed between the North, Northeast, South and Southeast regions were included in our meta-analysis. We observed an overall allelic frequency of 4\% (95\%-CI, 0.03-0.05), that was considered moderate and, notably, higher than some European populations, such as Cyprus (2.8\%), Italy (3\%) and Greece (2.4\%). Regarding the regional frequency comparisons between North-Northeast (N-NE) and South-Southeast (S-SE) regions, we observed an allelic frequency of 3\% (95\%-CI, 0.02-0.04) and 4\% (95\%-CI, 0.03-0.05), respectively. The populations from S-SE regions had a slightly higher CCR5-delta32 frequency than N-NE regions (OR=1.41, p=0.002). Although there are several studies about the CCR5-delta32 polymorphism and its effect on the immune response of some infectious diseases, this report is the first meta-analysis study that provides a descriptive study of the distribution of CCR5-delta32 allele in Brazilian population.

}, issn = {1567-7257}, doi = {10.1016/j.meegid.2016.05.024}, author = {Silva-Carvalho, Wlisses Henrique Veloso and De Moura, Ronald Rodrigues and Coelho, Ant{\^o}nio Victor Campos and Crovella, Sergio and Guimar{\~a}es, Rafael Lima} } @article {8521, title = {TRIM5 gene polymorphisms in HIV-1-infected patients and healthy controls from Northeastern Brazil.}, journal = {Immunol Res}, year = {2016}, month = {2016 Jul 8}, abstract = {

Humans show heterogeneity in vulnerability to HIV-1 infection, partially under control of genes involved in host immunity and virus replication. TRIM5α protein has restriction activity against replication of many retroviruses. Human TRIM5 gene single nucleotide polymorphisms have been reported as involved in susceptibility to HIV-1 infection. We recruited 213 HIV-1-positive patients and 234 healthy uninfected controls from Northeast Brazil; two non-synonymous variants at exon 2, rs3740996 (H43Y) and rs10838525 (R136Q), and one regulatory polymorphism (rs16934386) at 5{\textquoteright}UTR region of TRIM5 were analyzed. The R136Q variation presented significant differences between HIV-1-positive patients and healthy controls. The 136Q allele and the 136QQ genotype were more frequent in healthy controls (32.7 and 10.2~\%, respectively) than in HIV-1-positive patients (136Q allele: 24.4~\%; OR 0.66; CI 95~\% 0.49-0.90; p value~=~0.008/136QQ genotype: 4.2~\%; OR 0.33; CI 95~\% 0.13-0.79, p~=~0.008) also after adjusting for age and sex. We also stratified our findings according to the presence of CCR5Δ32 variation, but the results remained the same. We observed that rs10838525 (R136Q) and rs3740996 (H43Y) were in linkage disequilibrium (D{\textquoteright}~=~0.71), forming four possible haplotypes. The H43-136Q haplotype was significantly more frequent in healthy controls (28.2~\%) than in HIV-positive patients (21.4~\%; OR 0.69; CI 95~\% 0.50-0.96; p~=~0.022). An increased frequency of allele (136Q) and genotype (136QQ) of the non-synonymous rs10838525 (R136Q) variant and the haplotype (43H-136Q) was observed among healthy controls individuals. Being aware of the limitation of this study (unavailability of exposed but uninfected individuals), we hypothesize a potential role for TRIM5 variations in the protection against HIV-1 infection.

}, issn = {1559-0755}, doi = {10.1007/s12026-016-8810-1}, author = {Celerino da Silva, Ronaldo and Coelho, Ant{\^o}nio Victor Campos and Arraes, Luiz Claudio and Brand{\~a}o, Lucas Andr{\'e} Cavalcanti and Crovella, Sergio and Guimar{\~a}es, Rafael Lima} } @article {7750, title = {Meta-analysis and time series modeling allow a systematic review of primary HIV-1 drug-resistant prevalence in Latin America and Caribbean.}, journal = {Curr HIV Res}, volume = {13}, year = {2015}, month = {2015}, pages = {125-42}, abstract = {

Here we review the prevalence of HIV-1 primary drug resistance in Latin America and Caribbean using meta-analysis as well as time-series modeling. We also discuss whether there could be a drawback to HIV/AIDS programs due to drug resistance in Latin America and Caribbean in the next years. We observed that, although some studies report low or moderate primary drug resistance prevalence in Caribbean countries, this evidence needs to be updated. In other countries, such as Brazil and Argentina, the prevalence of drug resistance appears to be rising. Mutations conferring resistance against reverse transcriptase inhibitors were the most frequent in the analyzed populations (70\% of all mutational events). HIV-1 subtype B was the most prevalent in Latin America and the Caribbean, although subtype C and B/F recombinants have significant contributions in Argentina and Brazil. Thus, we suggest that primary drug resistance in Latin America and the Caribbean could have been underestimated. Clinical monitoring should be improved to offer better therapy, reducing the risk for HIV-1 resistance emergence and spread, principally in vulnerable populations, such as men who have sex with men transmission group, sex workers and intravenous drug users.

}, issn = {1873-4251}, author = {Coelho, Ant{\^o}nio Victor Campos and De Moura, Ronald Rodrigues and da Silva, Ronaldo Celerino and Kamada, Anselmo Jiro and Guimar{\~a}es, Rafael Lima and Brand{\~a}o, Lucas Andr{\'e} Cavalcanti and Coelho, Hem{\'\i}lio Fernandes Campos and Crovella, Sergio} } @article {3530, title = {Association of CD209 and CD209L polymorphisms with tuberculosis infection in a Northeastern Brazilian population.}, journal = {Mol Biol Rep}, volume = {41}, year = {2014}, month = {2014 Aug}, pages = {5449-57}, abstract = {

Tuberculosis (TB) caused by Mycobacterium tuberculosis, is major cause of morbidity and mortality worldwide. So far, many candidate genes have been investigated for their possible association with TB. Dendritic cell-specific intercellular adhesion molecule 3 (ICAM-3) grabbing non-integrin (DC-SIGN) and Liver/lymph node-specific intercellular adhesion molecule-grabbing non-integrin (L-SIGN), encoded by CD209 and CD209L genes respectively, are known for binding to M. tuberculosis on human dendritic cells and macrophages. We screened 4 single nucleotide polymorphisms (SNPs) in the promoter region of CD209, namely -939G>A (rs735240), -871A>G (rs735239), -336A>G (rs4804803) and -139G>A (rs2287886) and tandem repeat polymorphisms in exon 4 of CD209 and CD209L genes looking for association with TB in a Northeastern Brazilian population (295 subjects, 131~TB patients and 164 healthy controls). The -139G>A and -939G>A SNPs were associated with susceptibility to TB, and in particular with pulmonary and extra-pulmonary forms respectively. The -871A>G and -336A>G SNPs were associated, the first with protection to both pulmonary and extra-pulmonary TB, the latter only with the pulmonary form. An association between GGAG haplotype and protection to TB infection was also found. Also tandem repeat polymorphism in CD209L exon 4 was associated with TB infection. This study provides evidence of an association between CD209 and CD209L polymorphisms and TB development in a Brazilian population, suggesting that variations in these genes may influence the protection and susceptibility to infection caused by M. tuberculosis.

}, keywords = {Adult, Alleles, Brazil, Case-Control Studies, Cell Adhesion Molecules, Dendritic Cells, Female, Genetic Predisposition to Disease, Haplotypes, Humans, Lectins, C-Type, Male, Mycobacterium tuberculosis, Polymorphism, Single Nucleotide, Promoter Regions, Genetic, Receptors, Cell Surface, Tuberculosis, Young Adult}, issn = {1573-4978}, doi = {10.1007/s11033-014-3416-y}, author = {da Silva, Ronaldo Celerino and Segat, Ludovica and da Cruz, Heidi Lacerda Alves and Schindler, Haiana Charifker and Montenegro, Lilian Maria Lapa and Crovella, Sergio and Guimar{\~a}es, Rafael Lima} } @article {3585, title = {DC-SIGN polymorphisms are associated to type 1 diabetes mellitus.}, journal = {Immunobiology}, volume = {219}, year = {2014}, month = {2014 Nov}, pages = {859-65}, abstract = {

Type I diabetes mellitus (T1DM) is an autoimmune disorder featured by raised glucoses levels. It has been hypothesised that raised glucose levels in T1DM might be recognised as PAMPs, leading to immune response by overloading the cell receptors for pathogens recognition. DC-SIGN is a transmembrane protein, present in dendritic cells (DC) and macrophages: it has an important role in inflammatory response and T cells activation. Notably, DC-SIGN activation and triggering of the immune response depend on the type of ligand, which may lead to a pro or anti-inflammatory pathway. In our association study, we analysed the SNPs rs4804803 (-336 A>G) and rs735239 (-871 A>G), both at DC-SIGN promoter region, in 210 T1DM patients and 157 healthy controls, also looking for a correlation with the age of onset of the disease. We found that the allele G and genotypes G/G and A/G of SNP-871 (rs735239), as well as the alleles G-G (rs735239-rs4804803) and genotypes combined AA-GG (rs735239-rs4804803) were associated with protection of T1DM development. We did not find association between these variations with the age of onset of the disease and the presence of other autoimmune disorders. Our results suggest that SNPs in DC-SIGN promoter region can be associated to protection for T1DM in the Northeast Brazilian population.

}, keywords = {Adolescent, Alleles, Case-Control Studies, Cell Adhesion Molecules, Child, Child, Preschool, Diabetes Mellitus, Type 1, Female, Gene Frequency, Genetic Association Studies, Genetic Predisposition to Disease, Genotype, Humans, Infant, Infant, Newborn, Lectins, C-Type, Male, Odds Ratio, Polymorphism, Genetic, Polymorphism, Single Nucleotide, Promoter Regions, Genetic, Receptors, Cell Surface}, issn = {1878-3279}, doi = {10.1016/j.imbio.2014.07.011}, author = {da Silva, Ronaldo Celerino and Cunha Tavares, Nath{\'a}lia de Alencar and Moura, Ronald and Coelho, Ant{\^o}nio and Guimar{\~a}es, Rafael Lima and Ara{\'u}jo, Jacqueline and Crovella, Sergio and Brand{\~a}o, Lucas Andr{\'e} Cavalcanti and Silva, Jaqueline de Azev{\^e}do} } @article {3624, title = {NLRP3 polymorphism is associated with protection against human T-lymphotropic virus 1 infection.}, journal = {Mem Inst Oswaldo Cruz}, volume = {109}, year = {2014}, month = {2014 Nov}, pages = {960-3}, abstract = {

Inter-individual heterogeneity in the response to human T-lymphotropic virus 1 (HTLV-1) infection has been partially attributed to host genetic background. The antiviral activity of the inflammasome cytoplasmic complex recognises viral molecular patterns and regulates immune responses via the activation of interleukin (IL)-1 family (IL-1, IL-18 and IL-33) members. The association between polymorphisms in the inflammasome receptors NLRP1 and NLRP3 and HTLV-1 infection was evaluated in a northeastern Brazilian population (84 HTLV-1 carriers and 155 healthy controls). NLRP3 rs10754558 G/G was associated with protection against HTLV-1 infection (p = 0.012; odds ratio = 0.37). rs10754558 affects NLRP3 mRNA stability; therefore, our results suggest that higher NLRP3 expression may augment first-line defences, leading to the effective protection against HTLV-1 infection.

}, keywords = {Adult, Brazil, Carrier Proteins, Female, Genetic Predisposition to Disease, HTLV-I Infections, Human T-lymphotropic virus 1, Humans, Inflammasomes, Interleukin-1, Male, Middle Aged, Polymorphism, Single Nucleotide, Protective Factors}, issn = {1678-8060}, author = {Kamada, Anselmo Jiro and Pontillo, Alessandra and Guimar{\~a}es, Rafael Lima and Loureiro, Paula and Crovella, Sergio and Brand{\~a}o, Lucas Andr{\'e} Cavalcanti} } @article {1747, title = {Frequency distribution of HLA DQ2 and DQ8 in celiac patients and first-degree relatives in Recife, northeastern Brazil.}, journal = {Clinics (Sao Paulo)}, volume = {66}, year = {2011}, month = {2011}, pages = {227-31}, abstract = {

AIMS: The aim of this study was to evaluate the frequencies of the HLA genotypes DQ2 and DQ8 and the alleles A1*05, A1*0201, B1*0201 and B1*0302 in individuals with celiac disease in Recife, northeastern Brazil.

METHODS: HLA DQ2 and DQ8 genotyping was performed for 73 individuals with celiac disease and 126 first-degree relatives with negative transglutaminase serology. The alleles DQA1*05, DQA1*0201, DQB1*02 and DQB1*0302 were identified by sequencing using specific primers and the EU-DQ kit from the Eurospital Laboratory, Trieste, Italy and double-checked by the All Set SPP kit (Dynal).

RESULTS: Among the 73 cases, 50 (68.5\%) had the genotype DQ2, 13 (17.8\%) had DQ8, 5 (6.8\%) had DQ2 and DQ8, and 5 did not have any of these genotypes. Among the 5 negative individuals, four had the B1*02 allele and one did not have any of the alleles studied. B1*02 was the most frequent allele in both groups (94\% in the patients and 89\% in the control relatives).

CONCLUSIONS: In this study, celiac disease was associated with the genotypes DQ2 and DQ8. DQ2 predominated, but the distribution of the frequencies was different from what has been found in European populations and was closer to what has been found in the Americas. The high frequencies of the HLA genotypes DQ2 and DQ8 that were found in first-degree relatives would make it difficult to use these HLA genotypes for routine diagnosis of celiac disease in this group.

}, keywords = {Adolescent, Adult, Brazil, Celiac Disease, Chi-Square Distribution, Child, Child, Preschool, Cross-Sectional Studies, Europe, Family, Female, Gene Frequency, Genetic Predisposition to Disease, HLA-DQ Antigens, Humans, Infant, Male, Middle Aged, Young Adult}, issn = {1980-5322}, author = {Castro-Antunes, Margarida Maria and Crovella, Sergio and Brand{\~a}o, Lucas Andr{\'e} Cavalcanti and Guimar{\~a}es, Rafael Lima and Motta, Maria Eug{\^e}nia Farias Almeida and Silva, Giselia Alves Pontes da} } @article {1746, title = {Mannose binding lectin gene (MBL2) functional polymorphisms are associated with systemic lupus erythematosus in southern Brazilians.}, journal = {Hum Immunol}, volume = {72}, year = {2011}, month = {2011 Jun}, pages = {516-21}, abstract = {

Susceptibility to systemic lupus erythematosus (SLE) has been associated with immunologic, environmental, and genetic factors. To uncover a possible association between MBL2 gene polymorphisms and SLE, we analyzed functional polymorphisms in the promoter and first exon of the MBL2 gene in 134 Brazilian SLE patients and 101 healthy controls. Genotype and allele frequencies of MBL2 A/O polymorphism were significantly different between patients and controls, and the O allele was associated with an increased risk of SLE. An association between low mannose binding lectin (MBL) producer combined genotypes and increased risk for SLE was also reported. Furthermore, when stratifying SLE patients according to clinical and laboratory data, an association between the A/O genotype and nephritic disorders and between the X/Y genotype and antiphospholipid syndrome was evident. Combined genotypes responsible for low MBL production were more frequently observed in SLE patients with nephritis. Our results indicate MBL2 polymorphisms as possible risk factors for SLE development and disease-related clinical manifestations.

}, keywords = {Adolescent, Adult, Aged, Brazil, DNA Mutational Analysis, Female, Gene Frequency, Genetic Association Studies, Genetic Predisposition to Disease, Genotype, Humans, Lupus Erythematosus, Systemic, Male, Mannose-Binding Lectin, Middle Aged, Polymorphism, Genetic, Population Groups, Promoter Regions, Genetic}, issn = {1879-1166}, doi = {10.1016/j.humimm.2011.03.007}, author = {Sandrin-Garcia, Paula and Brand{\~a}o, Lucas Andr{\'e} Cavalcanti and Coelho, Ant{\^o}nio Victor Campos and Guimar{\~a}es, Rafael Lima and Pancoto, Jo{\~a}o Alexandre Tr{\'e}s and Segat, Ludovica and Donadi, Eduardo Ant{\^o}nio and de Lima-Filho, Jos{\'e} Luiz and Crovella, Sergio} }